There are actually several ways to make your cut with a router and you can use which ever is easiest for you. With a router set up in a table it is usually easier to lay the panel flat on the table and run it past the bit. If you have a small table it may be easier to run it through standing up. When you make vertical cuts on a panel you need to have a higher fence to support the wood and you need to clamp a finger board to the table to hold the panel securely against the fence.
You can also clamp your panel to a bench and use a fence attachment on your router with a straight bit, clamp a board to your panel to act as a fence and use a straight bit or use a rabbiting bit with a bearing to guide you along the edge. All of these methods are correct and the results are the same; a clean cut that requires no sanding.
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