If you are referring to the inside corner, by the DW, I can't see a problem with changing direction. There will be a problem with the ogee bit not conforming to the 90 deg. angle, assuming you'll be laying the laminate in one piece.
If you were to use a 45 deg. (or another angle) bit, simple rasping, filing and scraping would complete the corner. You could do it after an ogee cut but, it would be a great deal more difficult, IMO.
'The true soldier fights not because he hates what is in front of him, but because he loves what is behind him.' G. K. Chesterton
Please edit your profile with a name and location so we can better assist you and make for a friendlier forum.